Quantitative analysis of λDNA using one drop accessory

May 28, 2021

Introduction

One drop attachment is a microsampling accessory that enables fluorescence measurements to be obtained with only 5 μL of sample. It is the most suitable and effective for quantitative analysis of multiple samples such as fluorescently-labeled DNA and various kinds of fluorescent dye.

This section demonstrates the use of the One Drop accessory to obtain fluorescence data and create a calibration curve of λDNA labeled with PicoGreen®.

 

FP-8250 Spectrofluorometer

Keywords

One Drop, nucleic acid, reproducibility, linearity

Results

The fluorescence spectra of λDNA for a variety of concentrations is shown in Figure 1, and indicates that the maximum emission wavelength is 523 nm.

Figure 1. Fluorescence spectra of λDNA labeled with PicoGreen®

The fluorescence intensity at the maximum emission wavelength (523 nm) was then measured five times for each sample to ensure measurement reproducibility. Table 1 shows these measurement reproducibility results
for each sample concentration.

Table 1. Measurement reproducibility results

Conc. (ng/mL) 1 2 3 4 5 Ave. S.D. C.V.(%)
0 53.3 52.4 55.9 53.1 55.2 54.0 1.49 2.8
1 63.6 68.1 65.9 66.5 65.1 65.8 1.68 2.6
5 110.3 106.7 105.1 104.0 110.0 107.2 2.86 2.7
10 157.6 155.5 156.1 153.0 151.7 154.8 2.39 1.5
50 447.1 465.3 460.2 455.8 469.0 459.5 8.56 1.9
100 865.9 856.9 848.3 850.6 853.9 855.1 6.86 0.8
500 3842.7 3831.0 3858.0 3828.9 3811.0 3834.3 17.42 0.5
1000 7766.2 7992.1 7925.3 7972.8 7805.7 7892.4 101.15 1.3

[Measurement parameters]
Measurement mode: Emission
Excitation wavelength: 480 nm
Emission wavelength: 523 nm
Bandwidth (excitation): 20 nm
Bandwidth (emission): 20 nm
Response: 1 sec.
Sensitivity: 620 V

A calibration curve was then created using the average value for each concentration from the reproducibility results in Table 1 and is shown in Figure 2. The correlation coefficient is 0.9999 and the standard error is 6.819, indicating a good fit.

Figure 2. Calibration curve of λDNA labeled with PicoGreen®

About the Author

Spectroscopy Group